Ralf Gabriels
Ralf Gabriels
That script is mostly out of date and should be removed or updated. Nevertheless, it could be of help as a template. Mostly all parts referring to C code can...
Waiting to merge for ms2rescore-rs 0.4.0 release.
Could we try to use Zenodo as resource, instead of our own server? I've uploaded the models here: https://zenodo.org/records/13270668
Hi @LLautenbacher, Thanks for pointing this out! We will update the README with up-to-date URLs. The current metadata table can be found here: https://hupo-psi.github.io/mzSpecLib/specification/metadata.html Best, Ralf
Any increase in #PSMs will depend on the type of dataset and search space. Generally, we see modest increases for simple searches (for instance the yeast UPS search above) and...
Usually just by plotting the amount of confidently identified PSMs at each FDR threshold, as in figure 1 of [doi:10.1016/j.mcpro.2021.100076](https://doi.org/10.1016/j.mcpro.2021.100076).
Nice results! Cool to see that combining multiple search engines improves identification rates. How would you interpret this? Would this come from differences in candidate PSM generation? I find the...
Hi @ATPs, Thanks for proposing and implementing this feature! I think it would be great if we could add gzip support for all io modules. However, I would prefer a...
It's part of a dependency that uses TensorFlow and which is used before the dependency that uses XGBoost. In short, it's a pipeline that combines multiple machine learning predictors, each...
Can be closed in favor of #53367.