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percolator support gzipped file

Open ATPs opened this issue 8 months ago • 2 comments

ATPs avatar Apr 16 '25 07:04 ATPs

just used import gzip to handle when input is '.gz' file

ATPs avatar Apr 16 '25 07:04 ATPs

percolator pin file generate by comet looks like

-.n[42.0106]LPPWLM[15.9949]SANK.-

can be changed to correct format

[+42.0106]-LPPWLM[+15.9949]SANK

ATPs avatar Apr 16 '25 08:04 ATPs

Hi @ATPs,

Thanks for proposing and implementing this feature! I think it would be great if we could add gzip support for all io modules. However, I would prefer a more unified solution to avoid code duplication. This would entail quite some refactoring. I will therefore close this PR for now and open a new issue to track progress on general gzip support.

Best, Ralf

RalfG avatar Oct 27 '25 14:10 RalfG