Ralf Gabriels

My idea for HDF5 was indeed to have an additional index array with the most common attributes as columns. We could make a small set of required attributes (e.g. precursor...

To update this issue: All metadata is listed in the following document https://docs.google.com/document/d/1rN5DJSowp2micxlwJQlPxlv39ZiaLEfv/edit. **When editing, ALWAYS make sure you are using the "Suggesting" mode. To activate this click on `View`...

Hi @AUldry, Thanks for posting an issue. The Windows installer packages everything it needs and does not use any externally installed Python libraries. I do not expect the preinstalled pyOpenMS...

Partially addressed in #162

Hi @ofleitas, Thanks for reaching out! It seems like there is something in your mzIdentML file that cannot be read. It might be corrupt in some way. The program crashes...

Hi @ofleitas, Regarding the first issue: An encoding problem, most likely. For future reference, a possible fix could be to open the mzIdentML file in an editor such as Windows...

Glad the second issue was also solved by updating. Can you provide some more information on the error? Could you paste the full log? Thanks!

Hi @ofleitas, Thanks for sharing the log. It seems that the issue occurs when calculating PEP values with qvality (through Triqler, through Mokapot). Although, I have not seen this problem...

The `IndexError` occurred due to input scores (before rescoring) that were all either 0 or 100 (PeptideShaker scores on this specific sample), from which PEPs cannot be calculated. The issue...

Hi @prvst, Unfortunately, not yet. However, if you have some machine learning experience, it should not be too hard to try. The [`ms2pip get-training-data`](https://ms2pip.readthedocs.io/en/v4.0.0/cli/cli/#ms2pip-get-training-data) command can be used to generate...