Rafiga Masmaliyeva issues

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                                            Rafiga Masmaliyeva

run lumpy without speedseq

Hi. I want to run lumpy on HPC cluster but do not have speedseq installed. How could I run lumpy with bam files I already have from bwa-mem alignment? Thank...

whamg on HPC

Hi, I am running whamg (wham/1.8.0) on HPC cluster. How can make wham to use more memory, or in general, how I can optimize running of wham in order to...

Reference fasta file for indexing

Dear KAGE developers, Which reference file you advice to use for indexing? I use GATK/GRCh38//Homo_sapiens_assembly38.fasta but it gives error: INFO:root:Validating input vcf INFO:root:Using buffer type INFO:root:0 snps/indels inside SVs filtered...