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run lumpy without speedseq

Open RafigaM opened this issue 1 year ago • 0 comments

Hi. I want to run lumpy on HPC cluster but do not have speedseq installed. How could I run lumpy with bam files I already have from bwa-mem alignment? Thank you in advance. Looking forward to the answering from you.

RafigaM avatar May 07 '24 08:05 RafigaM