Raef Shams

"CODE AVAILABILITY" The code and scripts for running the RFpeptides pipeline will be released upon publication. The scripts used for this work are also available as Supplementary Files.

I have used the ProteinMPNN-FasRelax combo in this repo (https://github.com/nrbennet/dl_binder_design) to generate a sequence and relaxed it to the backbone. But you still need to use AfCycDesign to predict and...

> Hi [@Raef88](https://github.com/Raef88), i tried the dl_binder_design but when doing the ProteinMPNN+fast relax combo the binder is not cyclized despite the ouput from RFdiffusion is good (is a cycle). Do...