QianhuiXu

@Brawni @ninal88 @r3fang Hi, thanks for a great package! I am having some issues when trying to perform runHomer for motif discovery across my clusters. This is my code: >...

@leeanapeters Hi, I have the same problem. This is my code: > motifs = runHomer( + x.sp[,idy,"pmat"], + mat = "pmat", + path.to.homer = "/home/qianhui/anaconda3/envs/chipseq/share/homer/bin/findMotifsGenome.pl", + result.dir = "./homer/DoubleNegativeTcell", +...

Do you know what the meanings of these module files and regulon file are? Thank you for kind help!

Thank you for your help! I have solved this error by changing the reading directory: gex_datasets = sorted(glob.glob('/home/shpc_100668/conga/GSE144469_RAW/*-CD3')) But I got another issue in the next step, I have put...

Hello, cellchat is a wonderful tool！ I ran into the same issue with running CellChat with my data. all cellchat@net$pval are 1 and all cellchat2@net$prob are 0 Is it because...