LI Junyu

From sampe:  From mem:  Strange bytes occurred randomly in `sampe` output, which made further analysis using `samtools` completely messed up.

Problem occurred when scaffolding

2

I'm using SOAPdenovo-fusion and SOAPdenovo-127mer to scaffold some mitochondrial contigs assembled by MEGAHIT, but a problem is that the scaffolding was frozen in mapping sequences for over 7 hours, while...

Strange result when trying to reproduce article data

3

Dear Meng, I'm testing the performance and result quality of MitoZ, but recently I found a strange result ([SRA](https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR955308)) which only have 3kbps, and missing much of the PCGs which...

Keeping terms not in DAG

2

Thank you for your great tool! I'm using EggNOG mapper to annotate my non-model organisms for subsequent enrichment analysis. The mapper outputs GOs for each gene and other terms in...

### Minecraft Development for IntelliJ plugin version 2023.1-1.6.12 ### IntelliJ version IntelliJ IDEA 2023.1.3 (Community Edition) ### Operating System Windows 11 ### Target platform Minecraft Forge ### Description of the...

Weird GO terms of some genes occurred in annotation

6

From querying the database, I found that the protein "10090.ENSMUSP00000046177" has a GO term "GO:0048749", which is the "compound eye development", a term for insect eye development. However, the protein...

Use `set()` instead of `[]` for `var_ids` in Solver

2

https://github.com/cdanielmachado/reframed/blob/1927419e9d7d986e8c3e7f86a442c839373d8b8d/reframed/solvers/solver.py#L36-L40 Will make `add_variable` to have performance regression if over 40k variables are added into the problem, and adding 200k variables will have 10mins overhead due to the query of...

Sending requests is actually blocking

1

**Describe the bug** The websocket limits only one coroutine to await on `recv` to prevent racing problem. However current pyvts introduces blocking behavior in https://github.com/Genteki/pyvts/blob/3c5fb840fe7e962830d0633d1e095f3409baab35/pyvts/vts.py#L117-L118 Because every spawned coroutine will...