LI Junyu

I had this same issue but the solutions above are not working, I tried for multiple times, and found some other strange issues that may be helpful to the final...

Also, it's quite strange that the scaffold generated from SOAPdenovo-fusion has no depth information:   The loss of depth info makes it much more difficult to identify the target...

It tested out to be the high thread number causing the assemble process stuck or losing too much k-mer when assembling, since randomness occurred in several rerun, made MitoZ outputting...

> Hi Prunoideae, > > Sorry for my late reply, I have been busy recently. > > It's true that the dataset used has effect on results when using MitoZ....

Met this issue on my own compiled binary. https://github.com/the-realest-stu/Rustic/blob/5dcdc2b40c20c1627458924f6b010559cd72e379/src/main/java/rustic/common/tileentity/TileEntityBrewingBarrel.java#L269 @the-realest-stu Could you please replace all the lines in this file that cast a out ItemStack by using ```java ItemStack out...

I think just providing general statistics of over/underrepresentation as a basis would be fine? But if a topology is needed, then making an OBO for KEGGs seems to be a...

Same issue, but rolling back to v2023.10.40 is fine for me.

MitoFlex requires a set of PCG and RNA annotation file to generate `Circos` graph, which is automatically generated during the `annotate` module, named `locs.json`. Currently we have no GenBank support,...

MitoFlex's annotation is completely based on `tblastn` then `genewise2`, which works for many of the situations as far as I concerned, but now seems too coarse in determining the precise...

Hmm, can you post the log of this run? On my machine it works without problem, I tried to recreate the conda environment with `environment.yml` and it worked fine. How...