Pooryamb

Using diamond instead of blastn

3

Hi, Can't we use diamond for nucleic acid searching similar to blastn?

The aligned part is one amino acid shorter than expected

3

Hi, Thanks for your great program. I am using foldseek to search some cif files against a database of pdb files. I see foldseek reports the alignment "one amino acid...

FoldSeek freezes when Run when run in parallel

3

Hi, I have realized when I search against my target database in parallel mode, foldseek freezes. Yet, when I run it in single-threaded mode, it has no problem. The issue...

Hi, Thanks for your amazing tool. I just wanted to suggest that it would be amazing if the bca databases could also be made from tar files. AlphaFold2 has provided...

Target and query columns are swapped in fast mode

1

Hi, Thanks for your amazing tool. I just noticed that in my experiment, "query" and "target" columns are swapped when search is conducted in "fast" mode. You can reproduce the...