Pooryamb

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Using diamond instead of blastn

> No a blastn mode is not supported at this time. A, T, C, and G can represent both amino acids and nucleotides. What happens if we create a new...

The aligned part is one amino acid shorter than expected

Thanks for your reply. I have the fasta file of the protein sequences and 3Di sequences ready. How can I make a database starting from these 2 files? @martin-steinegger

The aligned part is one amino acid shorter than expected

I substituted each sequence of DB_ss with the sequence cut from the 3Di transformation of the whole structure, and it worked.

FoldSeek freezes when Run when run in parallel

Thanks for your reply! Here you are: [log_multithread.txt](https://github.com/steineggerlab/foldseek/files/11049975/log_multithread.txt) [log_singlethread.txt](https://github.com/steineggerlab/foldseek/files/11049976/log_singlethread.txt)

FoldSeek freezes when Run when run in parallel

Hi again, I just noticed even though the FoldSeek run proceeds without an error on a single thread, its output is lossy. As I said in the first message, I...

v2.1.9 does not output `send` correctly when using long-read mode

The same issue happened to me! send is 0