Polina

Hello, @rpetit3 ! I am the dev of Phigaro. I'll upload Phigaro to Bioconda and will notify you)

@rpetit3 Once the Phigaro will be approved to bioconda it would be available at bioconda channel. But, still, after instalation via conda the user will need to run phigaro-setup to...

Hello @duboism, I'm regularly bump into problems with config of the bash or zsh environments when I run qsub. Or do automatisations through python subprocess / os.system. The nature of...

And, by the way, I think it is better to set `bigFile=TRUE` parameter for `readBamFile` function. (But I could be wrong, cause I did not use ATACSeqQC that much)

I run this script on purpose, not as part of any of your pipelines. (just wanted to see how this tool works). But I understood you and will use your...