CuBIDS
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PennLINC
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
It seems like we could adopt BIDS's terminology by referring to Key Groups (which are unique entity sets) as Entity Sets instead.
Closes #285. To do - [ ] Add conda config file so users can install datalad, git-annex, and git (and maybe the BIDS validator?). - [ ] Figure out how...
Closes . ## Changes proposed in this pull request - Add file collection entities (echo, mt, flip, part, and inv) to `NON_KEY_ENTITIES`. - Replace "modality" with "datatype" when applicable. -...
## Summary I believe that CuBIDS will currently only identify variants across subject and session entities. However, the majority of the time, runs should also have the same parameters.
## Summary When CuBIDS modifies files' `acq` entities, it should also describe the associated groupings in an `acquisitions.tsv` file. If one already exists, the original acq's entry should be copied...
## Summary CuBIDS will create a sidecar file for each imaging file, even when the information in those files is duplicated. I think it would be nice to have a...
## Summary For the most part, [file collections](https://bids-specification.readthedocs.io/en/stable/appendices/file-collections.html) are composed of files from the same acquisition. The files typically have the same suffix, but vary along specific entities (echo, part,...
## Summary I was thinking of cases where the datasets leverage inheritance with associated files (e.g., events, bvals, bvecs) and some of the source data files end up being variants...
`sbref` files associated with primary imaging files (e.g., `dwi`, `bold`) are not automatically modified in the same manner as the primary files.
