CuBIDS
CuBIDS copied to clipboard
PennLINC
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
## Summary Currently, CuBIDS has the entities that may exist in output filenames hardcoded. If we instead choose to limit CuBIDS to the `acq` entity (which is how we label...
## Summary CuBIDS apparently forces users to use a longitudinal dataset structure by hardcoding the session entity into filenames and paths. ## Additional details - CuBIDS version: 1.0.2 - Datalad...
In my case, it tried to rename `sub-03_ses-1_task-rest_acq-multiecho_run-02_echo-1_part-mag_bold.nii.gz` to `sub-03_ses-1_task-rest_acq-multiechoVARIANTNumVolumes_run-002_bold.nii.gz`. Note the shift from one leading zero to two. This seems to be due to this section of `CuBIDS.change_filename`: https://github.com/PennLINC/CuBIDS/blob/b8f5d47d64ba86506880a58249929ab13000c54a/cubids/cubids.py#L392-L393...
Per @mattcieslak, it may not be worth it to retain container support. Stems from https://github.com/PennLINC/CuBIDS/pull/282#discussion_r1469873303. We should try to get CuBIDS into conda-forge (https://conda-forge.org/), so that we can install it...
SDCFlows doesn't seem to work on phase-difference field maps with the IntendedFor field, but it does work on B0FieldSource/B0FieldIdentifier fields. EPI distortion correction seems to work with either one. I'm...
## Summary Hello, We are currently conducting a revised audit outputs of our abcd-hcp-pipeline for the HBN site (RU). However, we have encountered a limitation wherein we only receive structural...
To provide a brief summary for current state of the affairs: how many groups etc present. Primarily to alert user to the situation where some new data lead to some...
