Panos Provataris

icon location Biologist that did not like the wet lab. I do like dogs, sports, and sneakers.

Results 4 comments of Panos Provataris

Output files not always containing CDS filed

Hello @sagnikbanerjee15 , I have a couple of remarks and a question regarding your answer. 1) If some genes do not have CDS because they are non-coding, it does not...

Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency

Hello everybody, Since I also need this feature, I am willing to develop it as part of the methylseq pipeline. Please see this [conversation](https://nfcore.slack.com/archives/CP3RJSMF0/p1730989125014679) in slack.

Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency

Hello @trum994, I have worked on it before Christmas and have had some progress. It needs some more work though and I will resume it this week (busy with other...

Add `dorado` as the basecaller

I second this. It would be great if dorado is part of the next update of the nanoseq pipeline.