PaddleHelix

PaddleHelix copied to clipboard

pip install paddlehelix报错

2

python 3.9.19 cython-3.0.10 pgl-2.2.5 paddle 2.6.1 

wdi-nancy

运行helixfold-single-inference.py 报错

1

(helixfold) root@0939b8ff136b:/remote-home/lzy/Helixfold/helixfold-single# python helixfold_single_inference.py /opt/conda/envs/esmfold/lib/python3.7/site-packages/Bio/Data/SCOPData.py:21: BiopythonDeprecationWarning: The 'Bio.Data.SCOPData' module will be deprecated in a future release of Biopython in favor of 'Bio.Data.PDBData. BiopythonDeprecationWarning, Traceback (most recent call last): File "helixfold_single_inference.py",...

Linzy19

sh not support '[[' syntax, use bash to replace sh

BeingGod

hiv和muv数据集

1

您好，我在处理HIV和MUV数据集时遇到了一些疑问。论文中提供了HIV和MUV数据集的运行结果，但是chemrl_downstream_datasets并未提供这两个数据集，并未在finetune_class.sh中明确说明使用方法。能否提供关于这两个数据集的更多细节。

zoey731

Noisyntrain

Fix dependency name for scikit-learn in setup.py

2

**Description:** This pull request fixes an issue in `setup.py` where the scikit-learn dependency was incorrectly listed as `"sklearn"` instead of the correct name `"scikit-learn"`. This change ensures that the correct...

linkedlist771

Requirement.txt for helixdock and examples

4

Would you please add the relevant requirement.txt file as given in the installation instructions for helixdock? Would you also please provide some example codes and tutorials (e.g. in jupyter notebook...

lifecodetest

Usage problem

2

There are two files in pdbbind_core.json: label_file and complex_id_file, but they do not seem to be available in your tutorials. Additionally, posebusters.json contains the same content as pdbbind_core.json.

ActionBeam

add drug-drug-interaction

1

yeyeahh

When I was trying to install paddlehelix by `pip install paadlehelix`, I encountered an error saying: > python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [15...

AndyLiu-121