pb-metagenomics-tools

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Name the workflow HiFi-MAG-Pipeline Describe the bug After try to start the pipeline: "SyantaxError in line 48 of /mnt/mountdoom/mnt/work/bioinfo/home/pab23/miniconda3/envs/pb-metagenomics-tools/HiFi-MAG-Pipeline/Snakefile-hifimags.smk: invalid syntax" Expected behavior Expected the pipeline to run as normal...

Schadone

Error in rule Checkm2Database

6

**Name the workflow** HiFi-MAG-Pipeline **Describe the bug** Error in rule Checkm2Database **Expected behavior** Expected the pipeline to run as normal **Screenshots** [Tue Oct 24 10:29:41 2023] localrule Checkm2Database: input: /data0/hifi/new_hifi/pb-metagenomics-tools-2.1.0/HiFi-MAG-Pipeline/inputs/revio_all.contigs.fasta...

Rafa-Seong

Minimap2 issue with map-hifi

1

Please leave the headers below and replace the relevant text. This will expedite addressing the ticket. **Name the workflow** HiFi-MAG-Pipeline **Describe the bug** Older version of minimap2 (v2.17-r941) in conda...

ivwonter

Error: Unable to allocate 30.9 TiB for an array with shape

1

Hi, I tried to run your workflow on a dataset that was maybe a bit huge: 2x100Go of reads and 29Go of contigs. The job fails with the following error...

CaroleBelliardo