Matteo
Matteo
**Is your feature request related to a problem? Please describe.** I'm working on scaffolding some plant genomes and wanted to see the _before-after_ results for the process; at the moment,...
As per the description, upon running the follownig: ``` docker run biocontainers/mitohifi:3.0.0_cv1 findMitoReference.py --species "Lupinus albus" --outfolder ./ --type chloroplast ``` this message appear > Looking for chloroplast for Lupinus...
Hi there, I'm working with a non-model plant species (white lupine) for which I'm doing some benchmark tests comparing `GATK` and `DV` after pangenome alignment with `Giraffe`. The idea is...
Hi there, I've been spending some time working on a `ggtree` plot and wanted to color the box plot I added with `ggtreeExtra`, but I'm having some issues... below, the...
As per the title, is there a reliable way to generate an AGP file from the `info_fragments.txt`/`new_info_fragments.txt`, or using dedicated tools? I'm asking because I wish to switch from `PretextMap`...
Hi there, I generated a network (Neighbor Net) starting from a nexus file based on an IBS matrix for ~300 samples. Now, I wish to export the network structure to...
Hi there, I really appreciate the work so far and the many fixes and additions to this great terminal. One thing I was going to ask is whether the `shell`...
Hi I'm working with a pangenome built with `PGGB`, it's made up by five human individuals plus two references (CHM13 and GRCh38). What I wish to do is to attribute...
I have a dataset with two categorical variable: **chromosomes** and **generations** for 23 individuals each one of which has 2 replicates in _hap1_ and _hap2_. In this `df` I'm counting...
Hi there, I'm using the following code to generate a `facet_nested_wrap` plot for which, however, I have an element (CENT, _see_ image) presenting only one layer. Would it be possible,...