VCFTools.jl

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kose-y

parallel read

7

As suggested by @Hua-Zhou, the `nth` function in [IterTools](https://juliacollections.github.io/IterTools.jl/latest/#nth(xs,-n)-1) can indeed get the nth item of a VCF reader. I will implement a parallel read routine in the next few...

biona001

Missing is only allowed for unphased genotypes

biona001

It would be a nice feature to allow for `gtstats()` to report MAF/HWE p-values for the dosage data in addition to the existing method for genotype data. Some GWAS pipelines...

chris-german

Currently `convert_gt`, `convert_ht`, and `convert_ds` represent missing data as `missing`. This causes the output genotype matrix to be of type `Array{Union{Missing, T}, 2}`. If we use `NaN` to represent missing...

biona001

Roadmap

6

This issue documents the implementation roadmap for iterative solvers. - [x] Convert GT data to Plink format (SnpData) - [x] Subset VCF records according chromosome and position range - [x]...

Hua-Zhou

kose-y