fastv
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OpenGene
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Please see example attached. This is for a simulated read set of a single species, and a kmer collection containing that species amongst others. How is it possible for the...
Hi, I used fastv to do a virus detection. I have many fasta files of different viruses and used a loop to let fastv detect whether each virus exists in...
For larger long read sets, Fastv runs quite slowly. Would it be possible to up the maximum number of threads to speed it up? I tried to specify 48 threads...
Good day, I would like to know how to implement a new version of the ref genome more correctly: I mean where it can be retrieved from, which way to...
The latest release available on the [releases page](https://github.com/OpenGene/fastv/releases ) is v0.8.1, but downloading the binary installs version 0.9.0. It doesn't seem like the binary is available anymore for v0.8.1. I...
Hello- I have been unable to get fastv to render any visualizations, and realized from the example reports that plotly was being used, but not listed as a dependency. Does...
Hello, Thanks for this amazing tool. I am using fastv in perhaps an unusual way. I'm looking to detect the presence or absence of homologous gene clusters in metagenomic data....
Thanks for the very useful program. Can you please add support for bz2 files? Thanks!
Dear FastV developers, Is there a way to estimate abundance of a genome with proportion of reads matched by fastv? For an example genome mapped by fastv, if we are...
Dear FastV Team, I am testing fastv for many samples related to a reference virus genome. Is it possible to combine resulting html files for a comparative view? This feature...