Olivier
Olivier
Have you tried yourself if it can run with conda? there's an up-to-date braker3 conda package so normally it should (but perhaps I'm wrong): https://anaconda.org/bioconda/braker3 For modules, the best practice...
@GallVp you're right! My bad :) Braker is really not stable, I don't understand how packages like this can still be so hard so install and configure... I tried myself...
Hi, the same happened for me. As it is, the script download_eggnog_data.py is simply not working. Version used: 2.1.13 Thanks in advance, Olivier
HI! What is specific to the container you made? Did you just install the latest versions of HISAT2 / samtools?
Then you don't need to create a container yourself, you can directly use the Seqera containers: https://seqera.io/containers/ If you want, you can update the module yourself: https://nf-co.re/docs/tutorials/nf-core_components/components
Hi! Can you add this parameter with task.ext.args in your config file? https://nf-co.re/docs/contributing/components/ext_args