Roman Joeres

Hello, Thank you for approaching this issue, unfortunately, it is not yet solved. I pulled the latest version of the project and run the same prediction as in the initial...

Hi, I encountered the same problem for a small dataset of proteins (9 kinases, 10 GPCRs, and 10 Cyclophilins). I expected to get `29 * 29 = 841` values but...

I run the following: `foldseek easy-search ../pdbs/ fsdb aln.m8 tmp --format-output 'query,target,fident'` -> 474 results `foldseek easy-search ../pdbs/ fsdb aln.m8 tmp --format-output 'query,target,fident' --exhaustive-search 1` -> 487 results `foldseek easy-search...

Hi @martin-steinegger, sure. You can find them [here](https://github.com/kalininalab/DataSAIL/tree/main/tests/data/pipeline/pdbs) as part of my current project. I also tried to run your line from the recent post above, but I couldn't execute...

I looked into the problem a bit again and think, that the problem might be the square in line 26. That was the last thing I added before I saw...

@chofchof Sure. Due to GitHubs upload policies, I had to rename it to `segfault.png`. Yust change the extension should work. If not, let me know, we'll find another solution then,...

After some debugging, I found the following: - The differences in the groups becoming sulfated lie in different `modification_map`s in `glycan_data/loader.py`. - Both the invalid starting string and the missing...

This is going to be fixed by #59

Hi @imempress Please excuse the late response. This behavior is expected. In a two-dimensional setting, the protein and the drug forming an interaction entry in your dataset might be assigned...

@conda-forge/help-python The recipe has passed all checks and is ready for your review. Thanks !