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https://github.com/jamesaoverton/obook/blob/master/docs/contributing_to_obo_ontologies.md

nicolevasilevsky

https://github.com/cpathtutorial/mapping_course We have the go from CPATH - include a note in the README for the kind donation.

matentzn

Dedicate more time to template based editing workflows

4

I think we should give more space to this; also perhaps to adding a new term to an ontology in the normal way. @beckyjackson I think that rather than some...

matentzn

There is a bit of a controversy around the messaging of mapping vs ontology convergence in the later parts of the course - we need to hammer the OBO message...

matentzn

This guide is really fantastic I propose additional sections of usage of ontologies, in particular 1. NLP/NER. This could include material on how lexical info is captured in ontologies. Can...

cmungall

Shall we move all instructions on "How to Set Up X" to a single place?

1

Things like: How to set up docker/odk How to install ROBOT How to install Protege with ELK 0.5 are useful in their own rights, and IMO should be added in...

matentzn

Especially that a makefile is literally a file called `Makefile`

matentzn

Consider The RDCA-DAP: the data interrogator Use case for some examples

2

- Integrating a lot of data source such as - Clinical trial data - Registry data - Upcoming: - EHR - Genomics data - "implementing ontologies" - easy cleaning and...

matentzn

Make a small lesson on working on a Unix vs Windows system

1

During the first teaching of this course, it became clear that it really does make a big difference for people entering the area of Semantic Engineering whether they are on...

matentzn

As part of this years training on [Collaborative Workflows in Biomedical Ontologies](https://oboacademy.github.io/obook/courses/icbo2024/) we are organising a community challenge. ## Who can participate Everyone is welcome to participate, but there will...

matentzn