Niccolò Arecco

Brew update does not update // Updates suggestions

5

Hi, I'm trying to update from v1.0 to v1.1 and I'd like to use the command line not to be bothered with too much point and clicking. Following the suggestion...

--msa-mode options without brackets and spaces?

6

## Context I installed ColabFold in a conda environment that I activate before launching `colab_batch` on the HPC of my institute that has GPUs available. I followed the instructions to...

Hi, this is not an issue, just a report about a change in ggplot2 affecting your package. Best, Nicco ```R # devtools::install_github("dzhang32/ggtranscript") library(dplyr) library(ggplot2) library(ggtranscript) ``` Running the first example...

Setting seed - reproducible number of cluster

8

Hi, I was playing around with the different threshold parameters and realised that the same run can yield different number of clusters. ```sh python pae_to_domains.py *_predicted_aligned_error_v1.json --pae_cutoff 10 --pae_power 1...