Setting seed - reproducible number of cluster

[Ni-Ar]

Hi,

I was playing around with the different threshold parameters and realised that the same run can yield different number of clusters.

python pae_to_domains.py *_predicted_aligned_error_v1.json --pae_cutoff 10 --pae_power 1 --resolution 1
Wrote 13 clusters to clusters.csv. Biggest cluster contains 54 residues. Run time was 0.86 seconds.

python pae_to_domains.py *_predicted_aligned_error_v1.json --pae_cutoff 10 --pae_power 1 --resolution 1
Wrote 14 clusters to clusters.csv. Biggest cluster contains 54 residues. Run time was 0.73 seconds.

Is this something you also observed on the same input pae json file? I suspect this comes from the igraph community_leiden step, but I might be wrong.