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Plexon2 tests failing again with greater than 25 attempts to open files

15

**Describe the bug** ``` FAILED neo/test/iotest/test_plexon2io.py::TestPlexon2RawIO::test_read_all - OSError: Opening /home/runner/ephy_testing_data/plexon/NC16FPSPKEVT_1m.pl2 failed after 25 attempts. FAILED neo/test/iotest/test_plexon2io.py::TestPlexon2IO::test_assert_read_neo_object_is_compliant - OSError: Opening /home/runner/ephy_testing_data/plexon/NC16FPSPKEVT_1m.pl2 failed after 25 attempts. FAILED neo/test/iotest/test_plexon2io.py::TestPlexon2IO::test_create_group_across_segment - OSError: Opening /home/runner/ephy_testing_data/plexon/NC16FPSPKEVT_1m.pl2...

zm711

NIX to NWB

4

We have physiology datasets from large scale simulations on supercomputers (see https://dandiarchive.org/dandiset/001444). We use NetPyNE for our simulations, which providers well structured outputs (json) but not in NWB. I’ve been...

actionpotential

SpikeGLX is loading `XD` channels both as events and signal

2

```python from neo.rawio import SpikeGLXRawIO from pathlib import Path folder_path = Path("/home/heberto/neuroconv_testing_data/ephy_testing_data/spikeglx/DigitalChannelTest_g0") rawio = SpikeGLXRawIO(folder_path) rawio.parse_header() rawio ``` This is the digital only example on the gin tests:  So...

h-mayorquin

Inefficiency of creating large numbers of SpikeTrain objects

2

Dear Neo developers, We came across a use-case which revealed a major inefficiency in Neo (or rather the quantities package Neo uses, as I will explain). In our simulations were...

antolikjan

[WIP] Extract sync event timestamps from SpikeGLX streams

7

Slowly working towards https://github.com/SpikeInterface/spikeinterface/issues/2234 Trying to reuse the nidq digital channel event processing for handling sync edges. Will then align edges and change sampling rate/time vector as necessary Also, I'm...

guptadivyansh

Resolve plexon2rawio symlink if necessary

1

This resolves (for me) the "...failed after 25 attempts" problem when running tests. It was recently noted in #1707.

cheydrick

MaxwellIO: Fix issue due to disparity between routed and mapped channels

9

As mentioned in #1702, there can be a potential disparity between the list of mapped channels and routed channels when using stimulation electrodes. This PR attempts to fix this by...

LeMuellerGuy

Add Code Examples in Docstrings to CI Workflows

1

While implementing #800 I noticed some examples in function docstrings were not changed when the API of those functions changed. Currently examples in docstrings seem not to be tested at...

Kleinjohann

Support separate files per recording option in NeuralynxRawIO

5

Hi, Since version 5.7.0 Neuralynx Cheetah has supported an option for creating "separate files per recording". When stopping and restarting a recording within the same acquisition with this option enabled,...

alafuzof

set up collection of / extend utility functions

4

Using the neo structure can be quite cumbersome in some cases, eg like slicing objects based on an epoch array (#525). To improve on this we could A) extend the...

JuliaSprenger