Naturalist1986

I'm searching a metagenome (nucleotides) against a protein catalogue. I need to know how many reads mapped to each protein from the catalogue for functional analysis. I guess I expect...

Thanks! Do I need to download and recompile mmseqs? or can I just replace with the fixed file?

Hi, Yes, these are downloaded from NCBI Refseq. A portion of the genome contigs is missing from the generated fastqs, even though it is listed in the abundance file.

This gives a similar error: (srr_download) moshea@moriah-gw-01:/sci/backup/aerez/aerez/moshea/ncbi_mags$ srun sra-stat --meta --quick SRR2244401 srun: job 20797919 queued and waiting for resources srun: job 20797919 has been allocated resources 2024-01-10T13:10:32 sra-stat.3.0.10 int:...