scMiko
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NMikolajewicz
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
Hi, While running findCDImarkers function I had this error: ``` 2024-03-26 13:26:58.175816: Computing co-dependency indices... |++++++++++++++++++++++++++++++++++ | 67% ~04s Error in binom.test(x = imat[i, j], n = ncol(emat), p =...
Here the error multiSpecificity(object = seurat_object_v5) Error in getExpressionMatrix(object, which.data = "data") : no slot of name "data" for this object of class "Assay5" I think an update in the...
Hi, I recently found your package which will help make my scripts shorter, but I realized that the silhouette values obtained by you were different from the ones I got....
Dear developer, I am just wondering about the function ens2sym? How to use this to convert the ens to gene symbol for seurat? I tried it but nothing changed. Thanks...
I appreciate this nice R package, but I ran into a problem when following the “Cluster Optimization” vignette. The issue is that “plt.auc.dot” is NULL. I checked the multiSpecificity code...
Hi Team. Nice package. I followed the code from the tutorial changing only the seurat object names and the assay names (SCT or integrated). I found that the tool always...
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R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.