DTIPrep
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NIRALUser
DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation
We are using v1.2.4 of DTIPrep. Several of our users like to concatenate multiple DTI runs together. Generally each run consists of a single B0 volume followed by diffusion-weighted volumes,...
On rare occasions (e.g., 4 out of 453 sessions), the DWICount and BaselineCount values in InterlaceChecker are non-sensible, as if they haven't been initialized properly. e.g., DWICount: -1300997086; BaselineCount: 1300997134...
Hi, This isn't an "issue" per se. I thought it would potentially be very useful if the QCReport output included the z-scores that are calculated internally as part of SliceChecker...
Hi, If you turn on the QuadFit feature of SliceChecker (which to accomplish currently requires setting SliceChecker->SetQuadFit(1) in IntensityMotionCheck.cxx and then re-compiling), the values computed for 'normalizedMetric' are completely wrong....
Hi, Can you add the command line mode for creating protocol and setting options of protocol (e.g. turn off eddy correction) in future? It would be helpful to implement DTIPrep...
When doing visual checking and saving VC files, DTIPrep1.2.4 by default writes new files with "VC" in the name. The exception is the QCXML file. That one is overwritten, instead...
The current automatic brain masking is too inclusive for the purpose of entropy computation. Enable a new method that computes a restricted brain mask only comprising WM and GM excluding...
The entropy/direction checking writes a tensor image (tensor.nrrd) temporarily for the computation of the primary direction distribution. This is written in the current working directory, wherever DTIprep is started. This...