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Automatic brain masking is too inclusive, add new method

Open styner opened this issue 9 years ago • 0 comments

The current automatic brain masking is too inclusive for the purpose of entropy computation. Enable a new method that computes a restricted brain mask only comprising WM and GM excluding CSF for the purpose of entropy computation: 1- Compute IDWI as with FSL Bet on IDWI 2 - ImageMath -otsu 3 - ImageMath -conComp 1

This mask should be used ONLY for entropy computation.

styner avatar Jan 02 '15 18:01 styner