MultiQC
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MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
*In progress* Adds a test that generates a report, one per plot / use case, opens it in browser, takes a screenshot, and compares the image pixel by pixel. Resolves...
### Description of feature It is not clear how to run `multiqc.get_plot()` when there is a module, section, *and subsection*. For example, `Per Sequence GC Content` can include both `Percentages`...
In unit and integration testing, set up comparing the report screenshots vs. gold standards: - In tests, each plot or each module in `test_all_modules.py`, including the custom_content examples. - On...
- [x] Pass just single request with all the context, including bar plots and tables. - [x] Make it more stable. Why temperature=0.0 seems not to work? Use structured outputs....
- [x] This comment contains a description of changes (with reason) - Added new module for CellRanger ARC. I'm considering this as a separate module than Cell Ranger since both...
### Description of bug Multiqc says that there is a .json file which triggers an error. ### File that triggers the error [demux_Ni5_007.json](https://github.com/user-attachments/files/17436072/demux_Ni5_007.json) ### MultiQC Error log ```console multiqc ....
### Description of bug I am working on a new Cell Ranger ARC module and while testing I noticed that some of the HTML reports were skipped due to no...
### Description of bug I expected vertical bars in a barplot for the fastq-screen tool and this is what I get with multiqc 1.19 (). In multiqc 1.20. and...
### Description of bug when used multiqc, all other qc reports incorporated to multiqc report exept picard's CollectRnaSeqMetrics output files. one of these files attached along with log files. ###...
### Description of feature I'm running MultiQC as a python package inside Quarto. One of the strengths of Quarto is that it can produce content in a variety of formats...
