MultiQC
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MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
This is a standalone module from BBMap, which partly uses in BBDuk, however BBDuk 'standalone' produces different stdout (log) files, thus the module. - [x] There is example tool output...
- [ ] This comment contains a description of changes (with reason) - [ ] `CHANGELOG.md` has been updated - [x] There is example tool output for tools in: https://github.com/ewels/MultiQC_TestData/pull/238...
### Description of bug I am trying to run Multiqc and I am using the TXTs resulting from HsCollectMetrics (Picard) as input. Is it OK to use this input? Why...
Extension on https://github.com/ewels/MultiQC/pull/1512 > Added new Nextclade module. Some of the columns in the Nextclade table should probably removed. Will close https://github.com/ewels/MultiQC/issues/1455. I merged in those commits to my branch,...
Adds module for [Porechop](https://github.com/rrwick/Porechop) - [x] This comment contains a description of changes (with reason) - [x] `CHANGELOG.md` has been updated - [x] There is example tool output for tools...
Closes https://github.com/ewels/MultiQC/issues/1683 - [x] This comment contains a description of changes (with reason) - [x] `CHANGELOG.md` has been updated
Added new `Nextclade` module. Some of the columns in the `Nextclade` table should probably removed. Will close #1455. - [x] This comment contains a description of changes (with reason) -...
### Description of bug Hi! Whenever we use VEP with inproper data, the tool itself runs fine, but produces incorrect output. If it is then passed to MultiQC, it fails....
### Description of feature DRAGEN generates multiple metrics files, some of them already supported by MultiQC. Since one of those metrics files contains FastQC information I was wondering if MultiQC...
This PR is for a module supporting HTStream (https://github.com/s4hts/HTStream), a suite of preprocessing tools for high throughput sequencing data. HTStream is the main preprocessing tool used by the UC Davis...
