MrDotOne

I am having the same issue trying to built proj4 for R/4.0.2 on a CentOS 7.9 system. I have installed the proj and proj-devel packages which puts things in standard...

I made a change to the run file so when you execute it, it looks like this docker run -u `id -u $USER`:`id -g $USER` --rm -e AA_DATA_REPO=/home/data_repo -e argstring="$argstring"...

Pulled and running, it will take over 20hours but i will let you know. Thank you for your time. I do find adding the following to the run script avoids...

Someone on another repo suggested it, when i was having issues with the results being written as root and the person running it didnt have escalation privileges. I thought i...

I am still having issues [root:INFO] #TIME 79252.045 Plotting SV View for amplicon7 [root:INFO] #TIME 79318.830 Total Runtime /home/programs/AmpliconClassifier-main/make_input.sh: line 6: scf.txt: Permission denied grep: write error: Broken pipe /home/programs/AmpliconClassifier-main/make_input.sh:...

I will run as root and that should fix it but ...

OK, i reran the run as root using the run script as provided in the repo. It seems to have completed successfully. This is good progress. However, the two times...

Unfortunately that is not working. The run file works fine, for root, but not for a non-escalated account. I keep getting this error when i run as a user with...

Non-root users cannon chown/chgrp files., that is a serious cybersecurity concern.

Is there a way to implement a python script within the run file to do something similar to this? (base) [root@lri-uapps-2 data]# cat chown.py import os path = "/data/output" for...