MoMI-G

MoMI-G copied to clipboard

error 'cannot get position' when running bam2gam.sh

33

Hi, I'm trying to run bam2gam for my own dataset with the following command: `singularity exec --pwd /home/xxt050/opt/MoMI-G/scripts docker://momigteam/momig-tools:autobuild bash -x bam2gam.sh /home/xxt050/Data/A673_pacbio/HiFi/bam/A673.HiFi.hg19.sorted.md.bam /home/xxt050/Data/A673_pacbio/HiFi/vcf/momig_input.xg /vg/bin/vg ` and encountered this error:...

olechnwin

Unable to load Annotations on my own data

13

Hello, I have been trying to visualize some tomato data using MoMI-G. I have been successful loading and visualizing all my files (xg and pcf) except for the annotation file....

madeluis

tubemap view checkboxes not working correctly

1

Thanks for this great tool. When I run the demo version, in the Graph view, unchecking the path "inv_chr12:80842171&chr12:80861781" (purple) results in all paths being removed from the graph. unchecking...

matt-shenton

Unable to use MoMI-G on my own data

1

Hi! Excellent work on MoMI-G. I have a problem using MoMI-G. I am trying to use MoMI-G on my own data, and I am following the instructions in the [manual](https://momi-g.readthedocs.io/en/latest/quick_start.html),...

LittleHannah

Error running vcf2xg.sh on human data

30

I've returned to give MoMI-G another shot, this time with human data but I get an error trying to generate the `xg` file. ``` $ ~/MoMI-G$ sudo bash MoMI-G/scripts/vcf2xg.sh proband_trim_bwaMEM_sort_dedupped.bam.generator.V2.overlap.hashcount.fastq.bam.FINAL.vcf...

moldach

Error running vcf2xg.sh on c. elegans

22

First off, I have to say great job on the tool! I've played around with the practice data and now I'm very excited to try this tool out and show...

moldach

Incorrect annotation links

1

Hi I've just been going over the demo visualisation and noticed that the links within the Linear View: Annotations section has links to genes/repeats under the "Name" column which do...

brettChapman

Hosting on a remote server

3

Hi This is an amazing genome graph visualisation tool you have developed. I'm currently trying to get it to run. I can run locally on my laptop with the demo...

brettChapman

FYI I had issues to install packages until i enabled legacy openssl ``` export NODE_OPTIONS=--openssl-legacy-provider ```

alpapan

Any idea what could be causing this? ``` Failed to compile. /home/alexie/software/MoMI-G/src/widgets/Dnd.tsx (194,16): 'ScrollContainer' cannot be used as a JSX component. Its instance type 'Component' is not a valid JSX...

alpapan