Mikkel Schubert

This patch fixes an off-by-one error in the 'sliding_window' function. Briefly, the function checks if window_start + window_size > fqrec->qual.l, to determine if the current window is the last window,...

VariantRecalibrator R-script fails if `scales` v1.3.0 is installed

11

## Bug Report ### Affected tool(s) or class(es) VariantRecalibrator ### Affected version(s) - [X] Latest public release version [4.5.0.0] - [ ] Latest master branch as of [date of test?]...

move formatting of defaults to FormatterClass

5

This patch moves the formatting of default values into a new `FormatterClass` that is then set as the default for `Parser`. This was originally motivated by the observation that `help=SUPPRESS`...

Feature request: Allow bindings to return values

6

It would be handy if `run()` would return the result of the selected binding. Currently it always returns None. This would for example allow sub-commands to return an exit code...