Mikkel Schubert

Thank you for your comments! I apologize for the lack of documentation, but as you can probably imagine I'd prefer to wait until I am closer to release (I should...

Thank you very much for the response. If that is the case then I probably will remove that option. If there turns out to be people who rely on it...

A first implementation of this request is now available in the master branch (v3 alpha), but see below. The TL;DR is that you can accomplish what you want simply by...

I've added a summary of current breaking/major changes to the changelog: https://github.com/MikkelSchubert/adapterremoval/blob/master/CHANGES.md

An initial stab at a JSON report is now available in the master branch (v3 alpha, see comment in #52 for more information). Right now I've just focused producing something...

Hi, I'm afraid that I'll have to ask you to clarify what you mean by internal barcodes in this context, as I am a bit rusty on the terminology. Cheers

Thank you for the detailed explanation! Unless I am misunderstanding something, then barcodes of this type are already supported via the demultiplexing functionality. This is enabled when the user provides...

Hi, Thank you for letting me know. I no longer have access to a mac and therefore no longer use homebrew, so I didn't notice this change. It seems that...

Thank you very much! I am currently in the process of rewriting and re-organizing the documentation and manpage, as time permits, and I'll make sure to incorporate your suggestions. With...

Hi Mike, Thank you for the suggestion! I've actually been looking for alternatives to ValidateSamFile due to the poor performance, so I'll definitely take a look at biobambam2. However, at...