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                                            McSt_ber

How to force Monocle to use a specifc cluster as the starting/ending point

Hi kaizen89, Indeed thats a good question! The only thing I know is the parameter "root_cell" for ordering the cells were you can name a cell to use as the...

plot_genes_branched_heatmap with no reaction

Hi @grimwoo You can try to set `verbose = TRUE` then you can see if something is still running. For me it took nalso quite a while. May I ask...

Questions regarding input data processing and DDRTree output

Hi asmagen ;) Concerning your question for the max_components parameter in reduceDimension control: As you might noticed after increasing the number for "max_components" Monocle will generate more branch points, more...

Questions regarding input data processing and DDRTree output

Hi @yingyonghui , Sorry for late response! To be honest I don't know if this wasn't a coincidence that with max.comp = 2 you also ended up with 2 branch...