plot_genes_branched_heatmap with no reaction

[grimwoo]

thanks for developing such a magnificent software . here i encounter a problem : i want to plot the heatmap of genes of branches using plot_genes_branched_heatmap(monocle.tdcds,branch_point = 1,num_clusters = Num_clusters,cores = detectCores(),use_gene_short_name = T,show_rownames = T,return_heatmap = T). this could gave good performence previouly. however, now it takes days with no reaction (no error information and did not stop/finish), just like running a code with normal function. i wonder how to solve this problem, thanks!

[grimwoo]

console looks like this

[McStber]

Hi @grimwoo

You can try to set verbose = TRUE then you can see if something is still running. For me it took nalso quite a while. May I ask you how many cells you have in your monocle.tdcds dataset?

Best, McStber

[grimwoo]

thanks for your suggestion. i have about 2,5000 cells for monocle.