MaximilianNuber

I had the same problem. There was a compatibility issue with several packages which were installed as dependency for Gadfly in my case. In your case, try to remove "ImageTransformations",...

P.S. I am posting this question in MixedModels.jl, as in GLM.jl I would be able to use X, y as input for lm or glm. I haven't found this possibility...

Dear @dmbates, Thank you so much, this works perfectly. If I may, I would like to ask a follow-up question, about the correctness of my application to `GeneralizedLinearMixedModel` : I...

@dmbates Yes, the only random effect in the model is in the form `(1|sample)`, with the goal to retain sample structure. In larger or several datasets as my own I...

Dear @Zethson , My apologies, I currently cannot assign as much attention to this as I thought, especially since I intend to use this as part of my analysis. But...

My apologies. I copied the wrong chunk for the actual example. This following chunk takes longer than 10 min.: ``` system.time(pbulk % aggregate_cells(c(donor_id, cell_type), assays="counts")) ```

Dear @Lilly-May , dear @Zethson, My apologies for my long absence. I forked pertpy and started to implement and test this (it should be working already). So far, I added...

Dear @Zethson , I am slowly getting somewhere, and while I add and run the last tests I would like to make sure everything is up to your guidelines and...

I am sorry, I just created a full pull request, but closed immediately because I meant a draft PR, which I submitted now. > https://scanpy.readthedocs.io/en/1.11.x/generated/scanpy.datasets.pbmc3k.html#scanpy.datasets.pbmc3k is a count matrix dataset....