Maxim Karpov

icon location PhD student in Ecotoxicogenomics at King's College London.

Results 3 comments of Maxim Karpov

confused about the results: sv.txt and cnv.txt

Hi, what do the columns in the coords and cnv files represent? The files were produced without headers.

confused about the results: sv.txt and cnv.txt

> > > > I do not get header INFO, either. In my thought, they may: ref_chr ref_start ref_end query_chr query_start query_end ref_copy query_copy. I do not know about the...

Error in reading paf file

> Hi, did you manage to fix this? You can try adding "row.names=NULL" argument to "alignments = read.table(opt$input_filename, stringsAsFactors = F, fill = T)" in the script file.