Matthias Zepper

Superseded by #3634. Closing.

Great work and thank you so much for the info! So then this issue comes down to writing a respective subworkflow similar to [bam_dedup_stats_samtools_umitools](https://nf-co.re/subworkflows/bam_dedup_stats_samtools_umitools), but using `umicollapse` instead. Maybe @drpatelh...

@ctuni : Thank you so much for all your work and effort! Greatly appreciated! We have some sequencing data from human [XpressRef Universal Total RNA](https://www.qiagen.com/us/products/discovery-and-translational-research/pcr-qpcr-dpcr/qpcr-assays-and-instruments/mrna-incrna-qpcr-assays-panels/xpressref-universal-total-rna) in different input concentrations and...

To give you a small update about my progress (or the lack thereof :grimacing:). I fetched @ctuni 's modification to the pipeline based on @CharlotteAnne 's subworkflow, but felt that...

Of course, you can help! Much appreciated! The [subworkflow](https://github.com/nf-core/modules/pull/5283) with umicollapse is done, but I was holding back with integrating it into the `rnaseq` pipeline, since it to me seemed...

Great! Please join the nf-core GitHub organization asap, so you can better interact with the different repos and issues! I think e.g. @drpatelh would be happy to send you an...

> Running a little behind on this, but still on my list, somewhere near the top. Please don't stress yourself over it. I have been neglecting this for months and...

Wow, one night of good sleep and one morning of not paying attention to GitHub and meanwhile this happened...🤯. I have not yet reviewed your PR, but from briefly glimpsing...

Since the Bioconda recipe anyway points to a fork of the original repo, I see no problem with changing it to your fork @siddharthab. If you could make a 1.0.1...

Thanks a lot for all the work you are investing in that! Unfortunately, I could not approve your PR to Bioconda, but I found somebody who could!