Matthias Zepper

> I could gather after carefully reading the commandline output that it tried to download the images from quay.io when in reality the images are hosted on docker.io. Since nf-core...

I think, that change is perfectly fine! There is even already a name sorting happening for the UMI deduplication route, at least for the transcriptome alignments: ``` if (params.with_umi) {...

No need to excuse for too much information! Actually, it is fantastic, that you put the effort in to research and document it. But it would actually even better to...

I think, this issue can be closed, since the documentation has since been improved significantly. Thanks!

At the first glance, I do not sport anything out of the ordinary there. The containers are correctly identified by `nf-core download` as shown by the debug statements. But since...

Thank you for the investigation into the issue and your detailed report. It was already brought up before in #1554 and closed as completed, because it is resolved now on...

> Note that I had only checked the open issues before submitting mine — I’ll be sure to review the closed ones as well next time to avoid duplicating reports....

Nice! I love to see some work in that direction and will need to take a closer look. A few quick questions that came to my mind at the first...

> Done. Test failures (most likely) unrelated or at least I have no idea what they mean. There is a problem mapping your CLI arguments to the parameters of the...

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