Matthias Zepper

Results 106 comments of Matthias Zepper

What exactly would you want to test here? And wouldn't [Mailcatcher](https://mailcatcher.me/) suffice to test that functionality? It is also available [as a separate Docker container](https://hub.docker.com/r/dockage/mailcatcher).

For the person working on this during the Hackathon, you might find [this excellent summary of the necessary steps](https://github.com/nextflow-io/nextflow/discussions/4708) helpful.

> Container libraries for Docker: `nextflow inspect` will return the absolute URI regardless of whether the URI in container directive is absolute or not. Perhaps this is better addressed when...

The desired top-level documentation [is available on the nf-core website](https://nf-co.re/docs/usage/getting_started/configuration#understanding-and-modifying-tool-arguments), but not duplicated for each pipeline. RSEM does not allow passing custom arguments to STAR, so there is nothing that...

There is no priority or level. Using `ext.args` is a convention for nf-core modules and is commonly used. In about 1% of the modules, a second set of arguments is...

Thank you very much for your contribution! Your commits have been merged into #3634 and will be added through this branch. If you have time to test and review, this...

To even complicate matters, the most recent release of BBTools (39.03) now also contains a new tool to infer strandedness called `checkstrand.sh`. I have not done any comprehensive evaluation, but...

In the meantime, I suggest using [crabz](https://github.com/sstadick/crabz/tree/main) or [pigz](https://github.com/madler/pigz) for a way faster compression than gzip.

As far as SortMeRNA itself is concerned, the current module version is 3.4.6, but 3.4.7 is out. So it would be very welcome, if you would update [the module](https://nf-co.re/modules/sortmerna/) to...

Ah, I see! They now distribute the references as an extra asset in selected releases instead of committing them to the main repo. Thanks for pointing this out! For release...