MarcelaHer

Hi, the assembly/contigs.fasta is 3,4 MB the assembly/megahit/final.contig.fa 721,5 MB the metacompass_output/metacompass.final.ctg.fa is 724,4 MB I can't share the final log (pilon.log) as it is 34 Mb. I can share...

Hi, I run it again and got the same error. Please, I would be grateful if you can help me with this. Any idea why I am having this issue?...

For my run I did: go_metacompass2.py -r Luteitalea_pratensis.fasta -1 heavyclean_250_NewHeadersR_1.fastq -2 heavyclean_250_NewHeadersR_2.fastq -o metacompass_heavytest2 -m 1 -y 80 Now, for the tutorial: also didn't run, I did: go_metacompass2.py -r Candidatus_Carsonella_ruddii_HT_Thao2000.fasta...

Hi, thanks for your fast reply. my version of Bowtie2 is 2.3.5.1. and the folder "example1_output/logs" is empty

Hi, the "example1_output/assembly" is also zero I run: ls -lrt example1_output/assembly and total is zero should I re-install Bowtie2?

Hi, I got this output after running your command. It says reference seems not to be on a fasta, but I am double sure it is in fasta format. [mc.index.txt](https://github.com/marbl/MetaCompass/files/5170518/mc.index.txt)

Hi, our HPC expert did a run and they think is a problem with the print issues with python3. Also, they asked me why sometimes it is calling python3 and...

Hi, Our HPC expert checked it and Python3 is in python path when metacompass module is loaded MetaCompass/2.0-beta echo $PYTHONPATH /gpfs/software/ada/python/anaconda/2019.10/3.7 so I am not sure why we are having...

great, thank you. When do you think we can have access to it? Cheers.

Hi, when do you think you can upload the new version? Cheers!