alphaviz
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MannLabs
AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.
Hi, I am running AlphaViz in Python, and I wonder if there is a way to use the **plot_mass_spectra** function on a diaPASEF dataset analyzed with DIA-NN? When I read...
plotting.plot_elution_profile() is hard to viz for the details of each fragments when there are many ion matched. I suggest to use hovermodel="closest" instead of "x unified"
Hi, I did some more testing and wanted to investigate some AlphaPept vs MaxQuant results in AlphaViz. Here I noticed that the intensity values for MS2 fragments are different. More...
**Describe the bug** Hi, I wanted to briefly check something on our [Bruker IRT testfile](https://datashare.biochem.mpg.de/s/2sWNvImHwdELg55/download). I had analyzed it with MaxQuant 2.0.3.1 (output files attached). When opening it and clicking...
Hi, I have been trying alphaviz a bit more. I was able to run alphaviz on an M1 Mac with macOS Monterey. ✅ When checking the MS2 spectrum annotation I...
Hi, I was wondering is it possible to look at ubiquitinated peptides (UniMod:121) with AlphaViz? I was going to use the predict mode, but I can't see the nomenclature for...
I get this error when trying to run the program The stripped bar seems to continue to advance but I have yet to get any results. I do not know...
I added the paths to the full DiaNN output folder, the raw file folder, and the full path to the fasta file interface to AlphaViz 1.1.15 GUI web interface. The...
