alphaviz
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plot_elution_profile()
plotting.plot_elution_profile() is hard to viz for the details of each fragments when there are many ion matched.
I suggest to use hovermodel="closest" instead of "x unified"
And plot_elution_profile() calculates b/y ions inside this function with mass_dict, making it hard to plot elution for modifications not in mass_dict, I suggest to calculate b/y ions into peptide_info outside plot_elution_profile() to make it easier to plug-in other fragments calculator such as AlphaBase.