TractSeg
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MIC-DKFZ
Automatic White Matter Bundle Segmentation
Hello, I have performed all the step until the peak extraction. After I run the tractseg using peaks as the input it resulted in bad bundle segmentation (all bundle filesize...
Hi all, I ran into an issue with the new update to nibabel. It no longer contains the trackvis API. This broke TractSeg. see: https://nipy.org/nibabel/changelog.html?highlight=trackvis Best, Luis
In the following bedpostX folder, I tried running `TractSeg -i dyads1.nii.gz`.  However, the following error was output : ``` BedpostX dyads detected. Will automatically combine dyads1+2[+3]. Loading weights from:...
Hi, when using Tracking (default, see cmd below, according to https://github.com/MIC-DKFZ/TractSeg) I obtain the following error. However, if I add "--algorithm det" it is working. In addition, if I add...
I previously was getting the following error: **ImportError: cannot import name 'compress_streamlines' from 'dipy.tracking.streamline' (/Users/shakhu/opt/anaconda3/lib/python3.9/site-packages/dipy/tracking/streamline.py)** So I downgraded dipy as mentioned somewhere on this site using: **pip install --upgrade dipy==1.4.0**...
Hi, I am trying to process raw diffusion data to get approximate bundle segmentations with TractSeg. My data has dimensions of 80 x 128 x 128 x 148 and voxel...
Dear Experts I installed TracSeg and tried to run it. but could not import 'compress_streamlines' from 'dipy.tracking.streamline'. Regarding the previous similar issue (https://github.com/MIC-DKFZ/TractSeg/issues/178), dipy version 1.5.0 may cause this problem,...
I am using TractSeg via macOS. **python version 3.8.9 pip3 version 22.0.4** pytorch was also successfully installed, please see: ``` lixue@pc244-171 examples % pip3 show torch Name: torch Version: 1.11.0...
I am using tractseg via docker 20.10.7 on Ubuntu 20.04.4. I can run the sample data through the tractography steps cleanly as per your documentation. Unfortunately, it fails on my...
fuying@fuying-System-Product-Name:~$ TractSeg Traceback (most recent call last): File "/home/fuying/miniconda3/bin/TractSeg", line 20, in from tractseg.libs import plot_utils File "/home/fuying/miniconda3/lib/python3.7/site-packages/tractseg/libs/plot_utils.py", line 22, in from tractseg.libs import fiber_utils File "/home/fuying/miniconda3/lib/python3.7/site-packages/tractseg/libs/fiber_utils.py", line 10, in...
