MG-RAST-Tools
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Repository of script tools, examples, and contributed code for using the MG-RAST API
Hi, I'm using mg-rast-tool in order to download KO abundance at level1. I ran as follows: ``` mg-abundant-functions.py --user myuser --passwd mypassword --token mykey --id "mgmxxxxxxx.3" --level level1 --source KO...
Hello, I want to download the KEGG annotated functional files for some MG-RAST soil samples. I used some code like this: `curl "https://api.mg-rast.org/annotation/similarity/mgm4857466.3?identity=40&type=function&source=KO" > BG-Y2TE-B1ET9C12_blast.out` and got some blast output...
Adds option to turn hierarchy into string for csv output
This is the full upload and submit workflow used by NEON for automation of project submissions. It expects a home directory with a 'data' and a 'submitted' folder. The data...