Lucía Peña-Pérez

Adding stubs to PicardLiftovervcf, GATK4_mergevcfs and filterMutectCalls

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## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be...

Error in Counting_01_1_countRNA_splitReads_samplewise

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Hi, we have been getting an error when running the aberrant splicing module at the Counting_01_1_countRNA_splitReads_samplewise step. At first I thought that it was an out of memory problem, so...

## PR checklist Closes #XXX - [x] Fixed output channel vcf_lifted. Before adding the "." it would output both lifted and unlifted in the vcf_lifted channel. - [ ] If...

Annotating results with Ensembl Id or HGNC Id

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Hi, Thanks for such an amazing work with DROP, it is very useful and we are using it very often to look for aberrant expression and splicing in rare disease...

Is it just the published version that will not be maintained? Or does that include the unpublished v2.1 too?

Hi, We are using hmtnote in our research and want to use it within an nf-core pipeline. We have tried running hmtnote dump while using docker and singularity containers but...