Lucía Peña-Pérez

There is an error related to Conda that I am unsure on how to fix or if it is necessary to fix it: `Caused by: Failed to create Conda environment...

Hi, thanks for your reply. I tried to rerun as you suggested but I still get errors for some of the samples. I have attach the config file (the same...

Hi, Sorry, I did not notice your answer before. Sequencing libraries were prepared using the Illumina Stranded mRNA Prep and sequenced on Illumina. The fastq were then trimmed with trim...

Hi, I have tried running with 50, 60 and 72 cores and it fails. I have also tried to run the step that fails with a many more cores and...

It still fails, I have also tried giving 36 cores to the first step with `--set-threads AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R=36` so that each sample would be run on its own and it fails...

Thank you for your help. I have tried to run in many different ways, giving different amounts of cores. Most of the time I have run like this: `#SBATCH --time=48:00:00...

Thanks for the help. I have been running as you suggested but the job run out of time. After restarting it, I noticed that it restarted all the `AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R` that...

Thanks for the info, I had missed the `--rerun-triggers` update. Yes, in our system you can only allocate resources for a limited amount of time.

Hi again, the time-out-error was popping out after running for about 100h, it has taken quite some time ~500h but now aberrant splicing has run through all the samples. As...

Hi, sorry for the ambiguous question. I have run the aberrant splicing module with the `--rerun-triggers` option because our system can only allocate resources for a limited amount of time,...